Yuan Blog

「仰望星空 脚踏实地」

”google scholar part2”

”using pymed”

I have nothing to say Continue Most author information from google scholar are not complete. To overcome this problem, and get a more precise author overlap analysis. I searched each paper in...

Posted by Yuan on January 3, 2022

”google scholar part1”

”using selenium”

A year’s plan starts with spring During the Christmas holidays, I rewrote my google scholar analytic piplines. Though the current version is still tough, it returns the basic information we wa...

Posted by Yuan on January 3, 2022

Adaptor Trimming

2021_update

All tools work well enough RNAseq pipline update(2) During the library preparation process, Illumina adapter sequences are annealed to sequencing reads. The adapter sequences are required for...

Posted by Yuan on November 25, 2021

RNASeq Pipline

2021_update

RNASeq: from fastq to transcript counts VS code is the best text editor! Updated RNASeq pipline (1) I update my pipline for analyzing RNASeq data recently, using salmon 1.5.2. This blog i...

Posted by Yuan on November 24, 2021

pymed

Pubmed_search_python

To use pymed package to search pubmed database, we need to have an NCBI account and an ‘API’ key generated from NCBI account settings. After this basic info, I query Pubmed with different titles to...

Posted by Yuan on October 4, 2021

Bellman Equations

Deep reinforcement learning series

We all learn through rewarding systems. Our body also adapted through ‘awarding’ systems. I went through Reinforcement Learning: Theory and Algorithms, by Alekh Agarwal, Nan Jiang, Sham Kakade...

Posted by Yuan on September 10, 2021

street fighting scientist

try all you can

Time is mana An inspiring lecture Street Fighting Mathematics by Ryan O’Donnell for general introductions to approaching theory-ish problems. Indeed, most of time, we are jumping between an e...

Posted by Yuan on September 7, 2021

Python Google Scholar

Web Scraping with Selenium

Life is hard, and ignorance makes it harder I was trying to analyze my google citations. After testing several github repositories, I found two of them are helpful for my task. One is gschola...

Posted by Yuan on September 7, 2021

ssh keygen ssh add

ssh kegen

ssh-keygen ssh-keygen pairs: Generate key pairs The algorithm is selected using the -t option and key size using the -b option. The following commands illustrate: 1 2 3 4 5 ssh-keygen ...

Posted by Yuan on August 30, 2021

rJava

rJava configurations

rJava.so I got this error message when trying to load “SqlRender” Error: package or namespace load failed for ‘SqlRender’: .onLoad failed in loadNamespace() for ‘rJava’, details: call: dyn...

Posted by Yuan on August 27, 2021

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ABOUT ME

一个在生物大数据领域耕耘的牛仔
A geeker working on big data in biology.

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